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… his team tracked the thousands of bacterial and archaeal species using a DNA-based array developed at … Over the next decade, the JGI’s single cell genomics and metagenomics capabilities were harnessed in several Lab …

… of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of … allow researchers to focus on specific microbes within metagenome samples and associate their sequences with their … their environments. Summary The traditional shotgun metagenomics approach to learning more about environmental …

… and functional capabilities. Overview of Symposium Goals Metagenomic and single-cell sequence data have provided a … symposium series will provide an overview of the bacterial, archaeal and microeukaryote diversity cataloged and … Schulz,  New Lineages of Life Lead Emiley Eloe-Fadrosh, Metagenome Program Tanja Woyke, Microbial Program Robert …

… data from over 1.3 million publicly available bacterial and archaeal genome and contig sources.  The Impact Secondary … and secondary metabolites information from isolate and metagenome data.   The SMC ( smc.jgi.doe.gov ) is designed … Expansion of the SMC to include fungal, plant, viral, and metagenome data is currently underway. … U.S. Department of …

His group also handles the Stable Isotope Probing (SIP) Metagenomics pipeline  that reveals in situ functional … et al. 2024.  Spatial co-transcriptomics reveals discrete stages of the arbuscular mycorrhizal symbiosis. Nature Plants … activity for identifying and sorting slow-growing archaeal− bacterial consortia. PNAS 113 (28), E4069-E4078 …

… use to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to … in size and function to those in typical bacterial or archaeal genomes, the sequence is most likely not an … search tool combed through more than 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 …