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From Textbook to Real World Applications
When local students Maya Hanck of Carondelet High School and Tim Kostolansky of De La Salle High School expressed an interest in … Evans and Jan-Fang Cheng in the Functional Genomics group took it upon themselves to mentor them. …
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Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: A genome and transcriptome approach
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Mesophilic and Thermophilic Conditions Select for Unique but Highly Parallel Microbial Communities to Perform Carboxylate Platform Biomass Conversion
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Identifying the Microbial Cleanup Crew at a Superfund Site
… site. The chemical PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a local dry-cleaner. Researchers  identified two bacteria,  … Compensation, and Liability Act (CERCLA) was enacted by Congress in 1980 for Superfund sites which are hazardous …
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Genomic features of bacterial adaptation to plants
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Enhancers in Plant Development, Adaptation and Evolution
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Successional adaptive strategies revealed by correlating arbuscular mycorrhizal fungal abundance with host plant gene expression
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Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen Phytophthora capsici.
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… of viruses in the same drop—the vast majority not harmful to humans could be even larger. Viruses infect bacteria, … recent study  published in the journal  Nature , a team led by researchers at the U.S. Department of Energy (DOE) Joint … and also photosynthesis genes including potential light-driven proton pumps. “We’re seeing that this is likely a …
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome … Coclet et al., 2023. Virus diversity and activity is driven by snowmelt and host dynamics in a high-altitude watershed …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… of infecting different host species? Or, do they tend to specialize, infecting just a single host? Another wrinkle … This work,  recently published in  The ISME Journal , by contrast, relied on methods that eschew culturing, … well through the mat, so they’re likely constrained to a local population of host cells. If they were to lyse all …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … The disease is known more commonly as Sudden Oak Death or by its acronym, SOD. Of the dozens of Phytophthora species, … from the woodlands, the UC Berkeley team, along with local community college students Lea Green and Natalie …
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