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Natural Prodcast Episode 23: Aaron Puri
… And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that really got me into that because we had these new genomes that JGI had sequenced that were of these bacteria …
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From Competition to Cooperation
… lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader … lineages. To learn why, researchers analyzed 135 fungal genomes representing major fungal families, including those for which there were previously no genomes of symbiotic species available: 73 saprotrophs and …
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A Grass Model to Help Improve Giant Miscanthus
… Understanding the evolution of polyploidy, and how genomes respond to extra chromosome and gene copies, will … Miscanthus breeding programs. The team also sequenced genomes of numerous wild Miscanthus lineages to better …
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The More the Merrier: Making the Case for Plant Pan-genomes
… the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two … flowering plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many genes after such events, returning their genomes to a diploid state while retaining multiple copies …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science … hallii (Hall’s panicgrass), by generating two complete genomes from varieties that diverged over a million years … Science Program , JGI sequenced and assembled near-complete genomes of P. hallii var. hallii (99.2% complete) and P. …
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Data Ecosystem
… data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI and …
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JGI & KBase at PAG XXVII
… Bioinformatic Approach to Discovering Promoters Regulating Poplar Drought Response 7:27 PM Highlights from Genome of …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… and genome size from small, to large and even giant. The genomes of giant viruses are on the order of 100 times the … what has typically been associated with viruses, while the genomes of large viruses may be only 10 times larger. And … to take a more global look at giant viruses by capturing genomes of uncultivated giant viruses from environmental …
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A One-Stop Shop for Analyzing Algal Genomes
… genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting experimental … In part because of this evolutionary diversity, algal genomes can be incredibly complex and difficult to sequence …
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Plastome evolution in annual Brachypodium species reveals widespread heteroplasmy and chloroplast capture, lineage-specific codon usage bias, and low positive selection
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Open Frameworks Training the Next Generation of Scientists
… genomics. Fungi can be better understood through reference genomes, but unfortunately there are not many available to … study. This is because most fungal clades have no reference genomes. It’s a key problem to solve because fungi are very … and analysis at the JGI to help produce novel fungal genomes. They manually curate data to connect to the newly …
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DAS Tool for Genome Reconstruction from Metagenomes
… an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies … algorithms, allowing them to reconstruct more near-complete genomes from soil metagenomes compared to other methods. The Impact Understanding …
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