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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help or harm plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from …
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Pinning Down a Piece of Photosynthesis
By studying the structure and function of a cyanobacterial protein, researchers have new insights into how these ocean … are easy to point out. Plants, algae and cyanobacteria create the air we breathe and the fuel for food webs as they … a research scientist at the JGI and Molecular Foundry, and the study’s senior author. In other proteins, two …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… as well as material that can be converted to energy, are made up heavily of sphagnum mosses.  New research identifies … just under 400 mosses that can carry up to 25 times their dry weight in water, makes up the overwhelming majority of … associated greenhouse gas emissions as well as the need to protect these vital ecosystems. Peat bogs have two distinct …
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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers … from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley …
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Metabolomics Program
… molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular level. Integrating genomics with … fuels the discovery  of novel metabolites, genes, and proteins. It also enables exploration of energy and nutrient …
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A hemoprotein with a zinc-mirror heme site ties heme availability to carbon metabolism in cyanobacteria
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User Executive Committee Charter
… providing input and advice on JGI policies and practices that affect users and their science including technical … and the broader scientific community and promotes communication and collaboration within the user community. UEC responsibilities …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… show methanogenesis is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, regulate Earth’s climate. Most methane is produced in … to definitively prove two other archaea within the Thermoproteota phylum —  Korarchaeia and  Methanomethylicia   — …
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Plant Pan-Genomics Comes of Age
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Exploring Possibilities: 2022 JGI-UC Merced Interns
In this short video, UC Merced undergraduate and graduate students share how their summer internship … passion for it, it’s possible to do amazing things. And it made me explore every single possibility. And also … and Fang when they’re doing their internship, it really made me think about should I, do I really wanna do a PhD in …
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2024 Progress Report
The Integrative Genomics Building (IGB) seen above is home to the DOE … with us, along with more than 15,000 secondary users who made use of our data. We completed 39,870 projects in FY24 … sugarcane genome sequence. The JGI  partnered  with synchrotron user facilities to define the structure and function …
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A Complex Confection Decoded: Sugarcane Reference Genome
… for the sugarcane cultivar R570 has been  published in  Nature by an international consortium. With the genetic code … rust disease resistance works in sugarcane could help protect other crops facing similar pathogens. Summary Many … that durable resistance to brown rust disease caused by the fungus,  Puccinia melanocephala . This plant pathogen used …
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