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Tracking heavy water (D2O) incorporation for identifying and sorting active microbial cells
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Visualizing in situ translational activity for identifying and sorting slow-growing archaeal−bacterial consortia
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Type IV Pili‐Associated Secretion of a Biofilm Matrix Protein From Clostridium perfringens That Forms Intermolecular Isopeptide Bonds
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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Sequencing Submission Requirements for DNA Synthesis
… When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project … File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank …
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Tracing the Evolution of Shiitake Mushrooms
… 60 existing sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks … components — cellulose, hemicellulose, and the toughest molecule, lignin. Understanding Lentinula genomes and their … for converting plant waste into sugars for  biofuel production. Additionally, these fungi play a role in the …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … energy and environmental challenges.   Scanning the California oak woodlands from the air, large swaths of the … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… the ability to break down hardy plant cell walls and therefore hold clues to how humans could do the same on an … study subject that could lead to more sustainable energy production.  However, less than 10% of the microbes found in … down these recalcitrant carbohydrates into more versatile molecules that can be then utilized to generate other end …
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A Viral Ecogenomics Framework To Uncover the Secrets of Nature’s “Microbe Whisperers”
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Targeted and shotgun metagenomic approaches provide different descriptions of dryland soil microbial communities in a manipulated field study
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Niche differentiation of bacteria and fungi in carbon and nitrogen cycling of different habitats in a temperate coniferous forest: A metaproteomic approach
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his … biology and microfluidics at the University of California, San Diego. As the Sequencing Technology … pipelines to transition bench-scale methods into production workflows. He developed and scaled the …
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