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Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest … D are available for comparative analysis on JGI’s plant data portal  Phytozome , which is a community repository and … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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Identifying genomic data use with the Data Citation Explorer
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Corymbia Genome Expands Terpene Synthesis Knowledge
… lineages. The Science From the distinct smell of eucalyptus to the flavor of wine, terpenes are ubiquitous. A diverse … from a biofuels production perspective. By using genomic database alignment tools, researchers searched for TPS genes … to the number of TPS genes in E. grandis . Notably, the specific types of TPS genes found in C. citriodora suggest …
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Fungal Friends or Foes in Plant Roots
… boost yields for both food and for candidate bioenergy feedstock crops. Summary A plant is like an office building, its … isolates from the collection. The team then compared this dataset against nearly 80 previously published fungal … Fungal Genomes project can enable studies of plant root microbiome and other microbiomes by providing reference …
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Multispectrum ModiFinder Site Localization Performance
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Congratulations to Jane Grimwood, who has been appointed the Loretta Purdy … JGI began soon after the JGI was established to work on the Human Genome Project in 1997. She was a group lead at … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… The planet’s resources are being stretched by a growing human population and increasing demand for agricultural … and how these conditions impact the crop and its microbiome. For three consecutive years (2016-2018), … 400 root and leaf samples and helped analyze the sequencing datasets. The results from the first year showed that 10,727 …
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BBMerge – Accurate paired shotgun read merging via overlap
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Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
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JGI Advisory Committees Code of Conduct
… of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley Lab’s) core … you in support of team science and service for the good of humanity. Sincerely, The JGI Leadership Team : Nigel … Ballon, Communications & Outreach Manager Tina Clarke, Human Resources Sr. Business Partner Nick Everson, Deputy of …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to maximize returns on these advances. Over the … Stable Isotope Probing (SIP) has opened vast windows into specific activities catalyzed by microbial communities. By … User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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