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Complete Genome Sequences of Two Phylogenetically Distinct Nitrospina Strains Isolated from the Atlantic and Pacific Oceans
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JGI Contributes Eight to 2023 Highly Cited Researchers list
Researchers from the JGI recognized for their “significant influence in their chosen field or fields through the publication of multiple highly cited papers during the last … combines and evaluates multiple predictions to reliably match viruses with their archaea and bacteria hosts.  Jeremy …
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey … nearly 100,000 single root cells and combining the information with previously published datasets. The work was  … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root …
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Game On: High School Students Drive Everglades Metagenomics Study
In late June, Kathleen Lail, a member of JGI’s Sample … partnership. The class decided to do an environmental microbial community (metagenomic) soil study in an untouched … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Uncovering Novel Genomes from Earth’s Microbiomes
… for multiple applications.       Despite advances in sequencing technologies and computational methods in the … have uncovered genomes for just a small fraction of Earth’s microbial diversity. Because most microbes cannot be … discovery environment designed for biologists and bioinformaticians, developed metabolic models for thousands of MAGs. …
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Tanja Woyke Elected to American Academy of Microbiology
… of Microbiology (AAM) ! She is among the 68 new Fellows in the Class of 2020, selected from 118 nominees. The … National Laboratory (Berkeley Lab), Woyke has led JGI’s Microbial Genomics Program since 2009 and heads the Single … expanded 10-fold, offering the opportunity to refine the phylogenetic tree of giant viruses and revealing metabolic …
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Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups
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Extensive Genome-Wide Phylogenetic Discordance Is Due to Incomplete Lineage Sorting and Not Ongoing Introgression in a Rapidly Radiated Bryophyte Genus
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons on … of biology and computer science, to reveal clues about how microbial and bacteria communities influence the … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry
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Complete Genome Sequence of Nitrosomonas cryotolerans ATCC 49181, a Phylogenetically Distinct Ammonia-Oxidizing Bacterium Isolated from Arctic Waters
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science … that make it useful for scientific inquiry: it shows a full phylogenetic tree of more than 100 sequenced algal genomes — … tools created by JGI researchers, including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for …
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