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MetaHCR: a web-enabled metagenome data management system for hydrocarbon resources
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User Programs
For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s … ONGOING Who Should Apply? Investigators with research projects that integrate the expertise and capabilities of …
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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data … being recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … functional assessment, host prediction, and phylogenetic analysis. The development of CheckV helps researchers to …
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Partnerships Development Team
Developed in 2017, the PDT was established in part to help better-connect industry to … high-throughput sequencing and other resources at the JGI for projects of relevance to Department of Energy missions. …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… … DAN: All right. Welcome back to Natural Prodcast. I did it. … can turn on the natural product, say clusters or expression systems so that-- BETSY PARKINSON: Exactly. DAN: --you get … unknown. And so we've done the sequence similallity network analysis where we look for other receptors with sequence …
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Legacy Effects of Cropping System and Precipitation Influence the Core Camelina sativa Microbiome
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UC Merced Interns Reflect on Their JGI Summer Projects
Over the course of eight weeks this past summer, 10 students from UC Merced worked closely with JGI scientists on research projects that contribute to the larger mission of the U.S. … language processing techniques to categorize genetic information. Learn more about their work here in a series of …
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Metagenomic analysis of the ET‐743 producer
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A global metagenomic map of urban microbiomes and antimicrobial resistance
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … or not you planned it, viruses are most likely in your system and in your data, and they’re probably influencing … culture. Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. …
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The Sphagnome Project: enabling ecological and evolutionary insights through a genus‐level sequencing project
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Jane Grimwood Named HudsonAlpha Genomics Chair
Congratulations to Jane Grimwood, who has been appointed the … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 … and biology of human chromosome 19 The DNA sequence and comparative analysis of human chromosome 5 The sequence and …
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