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Metabolomics Technology Group
… Our lab is using mass spectrometry based metabolite profiling to provide direct biochemical datasets to improve our understanding of microbial metabolism. Of particular interest … networks of environmental microbes and how they transform their environment. Research Team    …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial … on the JGI Integrated Microbial Genomes & Microbiomes (IMG/M) system . By analyzing the metagenomes, … (to EFD). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User …
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The Capsella rubella genome and the genomic consequences of rapid mating system evolution
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RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and … Department at the Joint Genome Institute. His team of engineers and scientists builds and operates the data and compute … pipelines and a laboratory information management (LIMS) system. He previously led the NGS Software team and …
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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for … Science In  PLoS Pathogens , a team of faculty and researchers describe a workforce development program for higher … (JGI), a DOE Office of Science User Facility, and the DOE Systems Biology Knowledgebase (KBase). The JGI and KBase are …
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Strain Engineering
… The focus of this group, in recent years, has been to bring generalizable technologies to bacteria, yeasts and algae … a taxonomically diverse suite of microbial chassis strains for elevated opportunity for expression. Research Team    … For further details, please reach out to the Group Lead …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein tied … to carbon cycling.  The Science Through a collaborative effort, researchers have identified a protein in soil viruses … This work was supported by the Department of Energy (DOE) Office of Biological and Environmental Research …
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GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems
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The JGI Data Portal: Improving User Experience
… The human-centered, agile collaboration between the JGI and the … Informatics Officer. JGI’s Portals, including Phytozome , IMG , GOLD , MycoCosm , and PhycoCosm , serve researchers … work on IMG and GOLD,” said Steve Wilson, head of the JGI’s Systems Engineering Group. “Our team’s ultimate goal is to …
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Metagenomic Profiling Reveals Lignocellulose Degrading System in a Microbial Community Associated with a Wood-Feeding Beetle
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Community proteogenomics reveals the systemic impact of phosphorus availability on microbial functions in tropical soil
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