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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days occur in April: … we’ll hear from Karolina Heyduk, an evolutionary plant biologist at the University of Hawai’i at Mānoa. I …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane reductase system, researchers could … they worked with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … North and his team set themselves up to move from that gene identification into mechanistic understanding. They …
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Identification, characterization, and gene expression analysis of nucleotide binding site (NB)-type resistance gene homologues in switchgrass
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Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass
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Identification of Candidate Susceptibility Genes to Puccinia graminis f. sp. tritici in Wheat
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Webinar: MycoCosm Tutorial
… JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. … While are still working on finalizing the tree and related publication the tree is still in development and not … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Do Genetic Drift and Gene Flow Affect the Geographic Distribution of Female Plants in Gynodioecious Lobelia siphilitica?
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Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation
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Improved Draft Genome Sequence of Microbacterium sp. Strain LKL04, a Bacterial Endophyte Associated with Switchgrass Plants
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Finding the Fermenters
… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … IMG data portals to get information about the genomes and genes of the organisms on the list. They also searched IMG/M …
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Mining Metagenomes for Cas Proteins
… possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by … from the University of California, Berkeley, report the identification of active Cas enzymes – dubbed Cas14 – that … of publicly accessible metagenomic datasets from a wide variety of ecosystems around the world, conducting …
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A comparative genomics screen identifies a Sinorhizobium meliloti 1021 sodM-like gene strongly expressed within host plant nodules
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