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Taxonomic and Metabolic Incongruence in the Ancient Genus Streptomyces
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Genome-Scale Data Call for a Taxonomic Rearrangement of Geodermatophilaceae
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Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential
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RegTransBase – a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes
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Rapid Kinetic Characterization of Glycosyl Hydrolases Based on Oxime Derivatization and Nanostructure-Initiator Mass Spectrometry (NIMS)
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Crawling through time: Transition of snails to slugs dating back to the Paleozoic, based on mitochondrial phylogenomics
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Plant Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, … including single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into … gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … abundant populations detected in the Washburn sediments and based on metabolic reconstructions, the team has two main …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked … fields, it now leverages controlled vocabularies with unit-based fields like depth and elevation recorded in fixed …
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A User-Centered Approach to Accessing JGI Data
… requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. … They have expressed an interest in using this to find files based on file metadata criteria. Wilson said that the Data Portal and  Genome Portal will continue to run in parallel for now. …
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that … leaves, a team of researchers sequenced  P. trifoliata ’s genome. Scientists at the US Department of Energy (DOE) … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation
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