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Identification of over ten thousand candidate structured RNAs in viruses and phages
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent … over 1,000 metagenomes and established standardized sequencing protocols so that researchers could compare … work was partially supported by awards from US Department of Energy (DOE) Office of Science, Office of Biological and …
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Next generation sequencing data of a defined microbial mock community
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Prepublication data sharing
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Clustering Categorical Data
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Searching for fat tails in CRISPR-Cas systems: Data analysis and mathematical modeling
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Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and 2032
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User Support Analysis Group
… We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and … epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product … development of automated analysis pipelines for standard sequencing products performed at scale. Our group also …
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A global soil plasmidome resource unveils functional and ecological roles of plasmids in soil microbiomes
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Applying Viral Genomics Expertise to Understanding the Human Virome
… tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky Way, viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm … online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … majority of these protein families belonged to bacteria and viruses, though 6 million of the sequences evaded …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility … Phytozome Data Portal …
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