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Special Initiatives & Programs
… ,  Science Focus Areas  (SFA) opportunities, and the  Office of Science Early Career Research Program .   If “BERSS” is … are NOT eligible for BERSS support through the JGI (with the exceptions of DE-FOA-0003453 and DE-FOA-0003615 , … performs sequencing, metabolomics and synthesis on behalf of the U.S. Department of Energy Bioenergy Research …
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Automated annotation of scientific texts for ML-based keyphrase extraction and validation
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … to energy independence in the U.S. Not only does it pair with maize, the dominant source of bioethanol, in crop … Sainsbury Institute, by annotating not just one but three genomes for P. pachyrhizi , which are available on MycoCosm …
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Intraspecific comparison and annotation of two complete mitochondrial genome sequences from the plant pathogenic fungus Mycosphaerella graminicola
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … our database of mappings between biochemical reactions and annotations. We look at what was annotated in the genome and …
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The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
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Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation
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Annotation and sequence diversity of transposable elements in common bean (Phaseolus vulgaris)
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Functional Annotation of Fibrobacter succinogenes S85 Carbohydrate Active Enzymes
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors who participated … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates and feature enhancements to the Genomes OnLine Database (GOLD) administered by the DOE JGI. …
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JGI Scientists Pen Genome Watch Articles
… more to come in 2020. Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … Seshadri. Writing the  Nature   Reviews column all started with an email in 2018.  Tanja Woyke , who leads the  … move toward characterizing the human microbiome  by its genomes and metagenome , rather than just by 16S ribosomal …
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Matt Blow
… to study genome regulation in human and other vertebrate genomes. When he joined the JGI, he worked as a project … Nottingham University, UK PhD in Genomics, University of Cambridge, UK Postdoctoral training Wellcome Trust Sanger … Price et al 2018. Mutant phenotypes for thousands of bacterial genes of unknown function. Nature 557:503-509. …
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