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Biodesign
… and novel automations for DNA design, assembly and analysis Overview of biodesign products The JGI Biodesign platform enables … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, … Software Engineers in the Synthetic Biology Informatics Group …
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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published in the …
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Genome analysis and description of Tunturibacter gen. nov. expands the diversity of Terriglobia in tundra soils
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Genome analysis reveals diverse novel psychrotolerant Mucilaginibacter species in Arctic tundra soils
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The Big Deal About Short Plants
… Despite their diminutive stature, “short plants” such as mosses could be uniquely powerful in helping … sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected …
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand … alga genome) and  MycoCosm (for the fungus genome) to aid analysis. Many of the results were unexpected. For example, … (IGSP 2008001) to DA, FL, and FD from the Duke Institute of Genomic Sciences and Policy (for DNA sequencing and …
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CSP Functional Genomics
… Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them … Biodesign and ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily … accepted proposals, sequencing, synthesis, metabolomics and analysis will be provided for free to the PI by the …
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Genome-wide prediction and transcriptome analysis of sugar transporters in four ascomycete fungi
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… below, captions are available) spotlighted the metabolomic analysis capability available through the  Community Science … (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … researchers worldwide.  Q:  To what extent is natural soil a limit to identify molecules exchanged between plants …
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John Vogel
… years where he was a driving force behind the development of numerous genomic resources that fostered the widespread … mutant collections, transformation technology, epigenetic analysis techniques) and utilizing these resources to … abiotic stress tolerance, and the mechanisms by which plants interact with their microbiomes. In addition, his …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … shrubby grass that can grow year-over-year on marginal soil and with few resources. Despite the low maintenance, it … flourished, so has the community of switchgrass researchers grown. After almost two decades of research, switchgrass has …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of reference genomes … This work was enabled by developments in sequencing and analysis methods within the JGI’s plant program. By … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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