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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are … With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of ecosystems. However, matching these viral genetic sequences to their hosts is crucial to understanding what …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, … viruses — to support scientists around the world. Most of those researchers send their samples in from afar, without ever hearing much about the sequencing …
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Particle‐association lifestyle is a phylogenetically conserved trait in bathypelagic prokaryotes
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Plasmid Copy Number Engineering Accelerates Fungal Polyketide Discovery upon Unnatural Polyketide Biosynthesis
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Stepping on the Gas to a Circular Economy: Accelerating Development of Carbon-Negative Chemical Production from Gas Fermentation
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Deciphering the evolution of flavin-dependent monooxygenase stereoselectivity using ancestral sequence reconstruction
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Picking Up Threads of Cotton Genomics
… growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … that relate directly and indirectly to genetic diversity, evolution, wild germplasm utilization and increasing the … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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Control of Bacterial Sulfite Detoxification by Conserved and Species-Specific Regulatory Circuits
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Conservative taxonomy and quality assessment of giant virus genomes with GVClass
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A Community Resource for Secondary Metabolite Researchers
… user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … agriculture. This comprehensive public repository of BGC sequences that come pre-annotated using multiple commonly …
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Pinning Down a Piece of Photosynthesis
By studying the structure and function of a cyanobacterial protein, … of that machine — photosynthesizers’ DNA and RNA. These sequences provide a list of machine parts, and an idea of …
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Dan Rokhsar
… directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … which they have applied and refined in the sequencing and evolutionary analysis of over fifty plant and animal … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, …
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