Results

The Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richness
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The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
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Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization
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Virus species names have been standardized; virus names remain unchanged
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Protocols
… Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction … Tips for High Molecular Weight DNA extraction: … RNA Extraction Protocols: … iTag protocols: …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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A roadmap for equitable reuse of public microbiome data
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management … JGI subject matter experts walked the class through the workflow and all the process steps of sequencing and … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and … in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … for those snowflakes, or RNA virus sequences. Using this workflow, the team combed through more than 5,000 data sets …
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Brachypodium: A monocot grass model system for plant biology
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Genome biology of the paleotetraploid perennial biomass crop Miscanthus
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Characteristics of Wetting-Induced Bacteriophage Blooms in Biological Soil Crust
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