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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an … database of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into energy. … on this form of metabolism, researchers recently compiled a list of with more than 8,300 organisms from multiple …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… From August 21-23, 2023, attendees joined the JGI Annual Genomics of Energy & Environment Meeting.  A wide array of invited … developments – has advanced their work on the world’s most pressing energy and environment challenges. The JGI … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Partnerships: Myco-Ed
… The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a … Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology … isolate genes and more. The metadata then goes into iNaturalist. Myco-Ed has:  ~50 lineages selected for sequencing 16 …
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Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal … genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … matter (saprobes), and many plant pathogens known to infect most major food crops and feedstocks for biomass and biofuel …
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LmbE proteins from Bacillus cereus are de‐N‐acetylases with broad substrate specificity and are highly similar to proteins in Bacillus anthracis
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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane … archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … hydrogen-dependent and CO2-reducing, or hydrogenotrophic (most common); methylotrophic; and, acetoclastic. All three …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global … is so important to crops. Additionally, cotton is almost entirely made up of cellulose and it is a fiber model … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different … reservoir of carbon on earth; because SAR324 — one of the most abundant organisms in the deep ocean — can fix carbon, … This research was supported by grants from the Simons Foundation …
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A Recommendation for Naming Transcription Factor Proteins in the Grasses
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The protein structurome of Orthornavirae and its dark matter.
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Meeting Code of Conduct
… All participants and staff of JGI events are required to adhere to the following Code … entire event. All participants are expected to be familiar with this policy. Our aim in hosting an event is to build a …
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