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Leptothrix ochracea genomes reveal potential for mixotrophic growth on Fe(II) and organic carbon
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a lichen fungus and … clearly. The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) … in the lichen lifestyle. The team’s results appear in  BMC Genomics . To explore the genomes, Armaleo and colleagues …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. If a … fungal metatranscriptome yet,” said Igor Grigoriev, Fungal Genomics Program Head at the JGI.  Along with an improved …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … Publication: Tyler BM et al. Phytophthora genome sequences uncover …
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Sulfur metabolites that facilitate oceanic phytoplankton–bacteria carbon flux
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Coastal bacteria and protists assimilate viral carbon and nitrogen
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Natural Prodcast Episode 24: Jackie Winter and SMC
… DAN UDWARY: Hey, everyone! Welcome to the “Self Promotion … as many as it did and how that became sort of a trend in genomics. So anyway, yeah, JGI has been working in secondary … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Perspective on taxonomic classification of uncultivated viruses
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  … of California, Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways used by the … which is aimed at determining the activity, expression and regulation of protein-coding genes. This first paper …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of … knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria ( … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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JGI Announces 2023 Community Science Program Awardees
… Congratulations to the proposers of the 19 proposals selected for the 2023 Community Science … success. “ The CSP Annual Call is focused on large-scale genomic science projects relevant to the DOE’s Office of …
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User Executive Committee Charter
… Executive Committee (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and … users and their science including technical capabilities offered, proposal review procedures, and the annual user …
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