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Improving the Cacao Genome and Phytozome
… infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s largest buyers of cocoa, is collaborating … JGI plant portal Phytozome at  phytozome-next.JGI.doe.gov . One of the goals in updating the genome annotation was …
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Specialized proteomic responses and an ancient photoprotection mechanism sustain marine green algal growth during phosphate limitation
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. … have been generated using techniques that the JGI has pioneered, including single-cell genomics and metagenomics. … Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from curated DSMZ isolates, for …
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Virus Discoveries that Keep Getting Bigger
… on giant virus diversity, and how sequencing and bioinformatics have sped up the study of giant viruses. The … algae  Emiliania huxleyi, a microeukaryote, forms large algal blooms in the ocean that cycle environmental carbon … viruses. This review highlights four of these approaches. One way of detecting giant viruses in sequence data is …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … said Eugene Koonin, a senior investigator at the NCBI and one of the senior authors on the paper, of the uncovered … datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then looked into …
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The JGI Data Portal: Improving User Experience
… agile collaboration between the JGI and the information technology company Truss has resulted in the JGI … Portals, including Phytozome , IMG , GOLD , MycoCosm , and PhycoCosm , serve researchers with unique areas of focus and … data more findable and easier to download is a complex one, so our joint team started small, in the tradition of …
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JGI Workshops at PAG
… Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With … of algae, and sampling of the length and breadth of algal diversity, the numbers of sequenced algal genomes, and … hear from researchers who are applying genomic sequence information to BER funded activities of plant systems. We will …
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Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a … program and current PhD student, reached this milestone with a recent publication in Molecular Biology and … summer, Wint hosted a virtual four-day data carpentry workshop for the incoming 2021 JGI-UC Merced interns to help …
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User Executive Committee Charter
… (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and practices … be elected annually by the UEC members and will serve a one-year term in that role. Following this term, the … UEC report. Elections Elections are held annually with one-third of the seats being filled each year. Anyone can …
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JGI@25: Using Team Science to Build Communities Around Data
… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science Program proposal. Joseph Spatafora of Oregon State University led the effort to sequence … with at least two genomes, and another 190 families with one. There are another 100 genomes in progress and 200 that …
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