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Applying Viral Genomics Expertise to Understanding the Human Virome
… the microbes in and on humans shape our health. A total of 16 projects have been approved, divided among the following … database of IMG/VR (Viral Resources.) Launched in 2016, IMG/VR is the largest publicly available collection of …
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The Power of One, Amplified
… In these springs, temperatures can reach as high as 80°C (~190°F), yet microbes thrive here. The communities in this … was then used to produce a paired amplicon dataset (a.k.a. 16S rRNA gene sequencing), a shotgun metagenome, and a … User Facility, is supported under Contract No. DE-AC02-05CH11231. This work was supported in part by a Natural Sciences …
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Building Wet and Dry Lab Skills
… the plants and extracting DNA. They also analyzed 16s amplicon data to determine microbiome composition. This …
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Introducing New Members of the JGI User Executive Committee
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Viruses Reprogram Cells into Different Virocells
… cells as virocells, a change in name first described in 2011 which reflects the metabolic changes they’ve undergone. … them. In the ocean, viruses outnumber surface microbes 10 to 1, and 20% to 40% of the microbes are infected at any … Research and operated under Contract Numbers DE-AC02–05CH11231 (JGI) and DE-AC05–76RL01830 (EMSL). This work was …
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JGI Scientists Pen Genome Watch Articles
… the  Nature   Reviews column all started with an email in 2018.  Tanja Woyke , who leads the  Microbial Program at the … biology. Du Toit invited JGI to write half of the 2019 Genome Watch articles as a way to expose readers to a … by its genomes and metagenome , rather than just by 16S ribosomal RNA gene censuses.  Emiley Eloe-Fadrosh ,  …
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New Research Sheds Light on Diversity in the Deep Sea
… function in such extreme conditions. They identified 511 new or recently discovered genera of bacteria and archaea. … by the US-National Science Foundation grants OCE-0728391, OCE-0937404, OCE-1558795 to A-L.R, and OCE-2049478 and DBI-2047598 to K.A. We …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Tara Oceans Expeditions that took place between 2009 and 2013, the  Chaetoceros genus has been identified as the most … proposes to develop high quality reference genomes for 10 individuals from each of the following five species:  …
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User Support Analysis Group
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Introducing New Members of the JGI User Executive Committee
… can serve no more than two consecutive terms. In late 2021, the JGI launched a solicitation for nominations for three … stages. The election period concluded on December 23, 2021. …
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First Monoploid Reference Sequence of Sugarcane
… modern sugarcane cultivars are hybrids, each with more than 100 chromosomes; assembling a sugarcane genome is incredibly … The final sugarcane sequence generated is 382 Mb; 25,316 protein-coding gene models were predicted with more than … U.S. Department of Energy under Contract No. DE-AC02-05CH11231. …
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Trent Northen
… Joint BioEnergy Institute and the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to … starvation modulate root exudation. Science Advances, 2024 10(1), Schadt, C., Martin, S., Carrell, A. et al. An … p.eadg7888. DOI: 10.1126/sciadv.adg7888 Treen D, et al.  SIMILE enables alignment …
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