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Marine Proteobacteria metabolize glycolate via the β-hydroxyaspartate cycle
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Recurrent patterns of microdiversity in a temperate coastal marine environment
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Eelgrass Proves to Be Much Younger Than We Thought
… less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in … form of another species, so the scientists had to use the genome itself.   Approximately 67 million years ago, the … by a fellowship to M.K. in the Helmholtz School for Marine Data Science (grant number HIDSS-0005) and by a grant …
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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging … Scientist at Lawrence Berkeley Laboratory, and Adjunct Professor at UC Berkeley. Dr. Pennacchio received his Ph.D in …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
A nuanced understanding of peat moss drives insight into carbon storage   The … peatlands. These boggy ecosystems are acidic and have very little oxygen, which is tough on the type of microbes that … change. Researchers at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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Finding the Fermenters
… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … to convert food into energy. However, in environments with little or no oxygen, life had found other ways to produce … including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the … are white rot fungi, belonging to an elite group of decomposers that can break down all of wood’s components — …
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Publication Policy
… (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … as assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators and JGI …
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Data Ecosystem
… cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the … to facilitate these efforts. Particular areas of emphasis will be the development of tools and … analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to …
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Effect of oxygen minimum zone formation on communities of marine protists
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A microarray for assessing transcription from pelagic marine microbial taxa
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Diversity and evolution of secondary metabolism in the marine actinomycete genus Salinispora
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