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Boosting Small Molecule Production in Super “Soup”
… engineered for the biochemical conversion of glucose to value-added products are limited in chemical output due to growth and viability constraints. Cell extracts provide … the source strains. (Blake Rasor) Think of cells as tiny factories: within their walls they have both the machinery to …
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From Competition to Cooperation
… 135 fungal sequenced genomes, researchers were able to carry out a broader analysis than had ever been done before to look at how multiple forest fungi have independently evolved … Mycorrhizal Genomics Initiative (CSP # 305), Metatranscriptomics of Forest Soil Ecosystems project (CSP # 570) and the …
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Defining a Pan-Genome for Antarctic Archaea
… hypersaline environments, and researchers are interested in learning how these microbes have learned to adapt from marine to hypersaline conditions by studying the microbial …
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Tracing the Evolution of Shiitake Mushrooms
… fungi are part of the genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and Antarctica. A  new analysis takes a  genomic look at Lentinula samples from around the world. By complete … samples, this study also tracks the enzymes these fungi use to break down wood, and compares genetic diversity between …
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JGI Accepts 17 Proposals for Community Science Program
… Monitoring Inter-Organism Interactions Within Ecosystems Latest … highlight biodiversity and how ecosystems are adapting to stresses. A total of 17 proposals have been approved … on Alaska’s glacially dominated Copper River Delta. They’re looking at how the microbes in these high latitude wetlands, …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a … polymorpha. Commonly known as liverwort, this was done to gain insights into gene families involved in adaptations … and adaptations, scientists want to take a further look into identifying genes related to biotic stresses to …
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How to Target a Microbial Needle within a Community Haystack
… Microbiology has developed, tested and deployed a pipeline to first target cells from communities of uncultivated … a more targeted genomic approach would allow researchers to focus on specific microbes within metagenome samples and … Summary The traditional shotgun metagenomics approach to learning more about environmental samples starts with …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The … where you can browse the genetic blueprints of these photosynthetic organisms. PhycoCosm is one of the largest data … browser that allows algal scientists and enthusiasts to look deep into more than 100 algal genomes, compare them, …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… kick-off meeting held at Lawrence Berkeley National Laboratory (Berkeley Lab) marked the visit of an esteemed … and systems biology, omics, and big data science, machine learning for experimental science, energy conversion and … in many impactful papers in recent years, but are also looking forward to jointly expanding into new areas of …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… Program (CSP) Applications Webinar inviting researchers to submit white papers to the CSP  New Investigator call for proposals.  Tips: … under the sequence cap? A(nswer): Proposals that are looking at multiple areas or multiple ways to answer … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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Training the Next Generation of Talent
… was back on campus at the University of California, Merced to start orientation as a first-year graduate student in the … trillion base data sets on daily basis.” As part of their learning experience, the students had to give a presentation … and Lawrence back on campus, Visel and Wang are already looking forward to opening the graduate internship program …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, … Biotechnology , 2024), and iPHoP , an integrated machine learning framework to maximize host prediction for … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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