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gRNA-SeqRET: a universal tool for targeted and genome-scale gRNA design and sequence extraction for prokaryotes and eukaryotes
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Viruses Reprogram Cells into Different Virocells
… still a duck? For a team led by researchers from The Ohio State University and the University of Michigan studying how virus … cells as virocells, a change in name first described in 2011 which reflects the metabolic changes they’ve undergone. …
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Igor Grigoriev
… and an Adjunct Professor of Plant and Microbial Biology at University of California, Berkeley. He contributed to the … genomics resource.  Nucleic Acids Res. 49(D1):D1004-D1011 Swift et al (2021) Anaerobic gut fungi are an untapped … of natural products. Proc Natl Acad Sci U S A. 118(18):e2019855118. Miyauchi et al (2020) Large-scale genome …
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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing … high-performance computing resources, an upcoming hackathon led by the Oak Ridge Leadership Computing Facility … sent out. The main benefit is professional growth and development for the developers, and the code owners will be able …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
…   The JGI is excited to announce the 18 scientists selected for our 2025 Community Science … research into microbial communities — from freshwater estuaries reshaped by dam removal to Antarctica’s photosynthetic mats — to reveal how these systems adapt and contribute to …
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Soybean (Glycine max) Haplotype Map (GmHapMap): a universal resource for soybean translational and functional genomics
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Tracking the Origins of Methane-Producing Microbes
… the National Academy of Sciences , researchers at Stanford University, the Chan Zuckerberg Biohub, and the U.S. … Woyke and her Single Cells team member Frederik Schulz to screen the microbial communities collected. The team noticed … of basic research in the physical sciences in the United States, and is working to address some of the most pressing …
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The More the Merrier: Making the Case for Plant Pan-genomes
… the merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one from each … de Aula Dei (EEAD-CSIC) (Spain); Fundación ARAID (Spain); University of California, Berkeley; Gregor Mendel Institute …
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A Collaboration to Improve Plant Genome Annotations Across Species
… specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently published work on the JGI Plant Gene Atlas in  … to include six more species, so in total, we are looking at 18 different species, which included over 2000 RNA Seq …
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Emiley Eloe-Fadrosh
… research at the Institute for Genome Sciences at the University of Maryland School of Medicine and her graduate … Earth’s microbiomes. Biotechnol . doi: 10.1038/s41587-020-0718-6. Wood-Charlson EM, et al. 2020. The National … science. Rev. Microbiol. 18:313-314. Roux S, et al. 2019. Cryptic inoviruses are pervasive in bacteria and …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
Back in 2011, JGI-supported researchers published a paper in the … The data from that study is now used across California State University campuses for biotechnology education as part of a …
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John Vogel
… in a pan-genomic context. … BS in Plant Science, Cornell University, NY; PhD in Biology, University of Illinois at … hybridum and its diploid progenitors. Nature Communications 11 (1), 1-16  https://doi.org/10.1038/s41467-020-17302-5 … Varoquaux, et. al.N. 2019 Transcriptomic analysis of field-droughted sorghum from …
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