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The Expanding Universe of Methane Metabolisms in Archaea
… suggest the diversity of methane metabolisms is “vastly underestimated.” In the March 4, 2019, issue of Nature … propose a scenario where methanogenesis is possibly the most ancient energetic metabolism in the Archaea, and was lost many times independently during archaeal evolution or …
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User Programs
… the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.    Proposal Call …
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Better Genome Editing for Bioenergy
… plasmid library. The team was then able to screen for the most effective guides. To do this, they tested each guide in … sgRNA effectiveness from its lethality and choose only the most reliable sgRNAs for their final set. Tool in hand, the … the CRISPR-Cas9 tool for a non-conventional eukaryotic host — an approach, the team says, that could be applied to …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… organizers Wang, Visel and Sindi, along with UC Merced Undergraduate Research Opportunities Center coordinator … benefit to our group’s research program.” Jess Jarett, a postdoctoral fellow in Tanja Woyke’s Single Cells Group who … graduated from UC Merced and starting the Helena O. Mishoe Post-Baccalaureate Research Fellowship at the National Heart, …
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Unexpected host dependency of Antarctic Nanohaloarchaeota
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Uncovering Novel Genomes from Earth’s Microbiomes
… a small fraction of Earth’s microbial diversity. Because most microbes cannot be cultivated under laboratory conditions, their genomes can’t be … “This study was designed to encompass the broadest and most diverse range of samples and environments, including … the United States, and is working to address some of the most pressing challenges of our time. For more information, …
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Virus Discoveries that Keep Getting Bigger
… metagenomics to single-cell work — have quickly accelerated understanding of giant viruses. The Science In the last … co-culturing isolated viruses in eukaryotic  microbial hosts. Lately, researchers have used culture-independent … parasites, giant viruses often infect microeukaryote hosts. In doing so, they influence ecosystem-level nutrient …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
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A More Intuitive Phytozome Interface
… it, nor had any feature updates. Phytozome  v13, which now hosts upwards of 250 plant genomes and has been under active development for over 5 years, provides users … access to all the data in Phytozome v12, and that most bookmarked v12 links (e.g., to gene reports and organism …
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Workforce Development & Education Outreach
… hands-on learning opportunities and ultimately, an understanding of the JGI’s role in enabling complex … Institute (SRI) at UC Berkeley is a program designed to foster a profound understanding of research methodologies within the realm of … the JGI has collaborated with Biotech Partners to host students transitioning from high school to community …
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Charting Progress toward Professional Goals
… Genomic data scientist Deanna Beatty sat down with interns hosted at the JGI through three different internship programs … at UC Berkeley. Sally Liao came in through the DOE  Science Undergraduate Laboratory Internship program, while Oliver … you wanted to share about it? Jehan Jacobs : I have a poster session actually, like just a couple days from now. So …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… 2013, the  Chaetoceros genus has been identified as the most abundant in the world’s oceans, found in a wide range of … staple crop there is millet, grown without fertilizer and under erratic rainfall conditions. To help mitigate drought, … the United States, and is working to address some of the most pressing challenges of our time. For more information, …
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