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Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park
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Metagenomes, Metatranscriptomes, and Metagenome-Assembled Genomes from Chesapeake and Delaware Bay (USA) Water Samples
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Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi
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Extensions of BLUP Models for Genomic Prediction in Heterogeneous Populations: Application in a Diverse Switchgrass Sample
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JGI@25: Strengthening Soybean
… and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has … the first legume species with a published complete draft genome sequence. At the time, the vital global source of … soybean genome sequence and ASR in this JGIota, a Genome Insider podcast minisode.)  In 2016, the JGI accepted a …
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OpenMSI Arrayed Analysis Toolkit: Analyzing Spatially Defined Samples Using Mass Spectrometry Imaging
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to … leaves, a team of researchers sequenced  P. trifoliata ’s genome. Scientists at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… and offered a way for researchers to study the planet’s microbial diversity, much of which remains unknown and … year, the JGI team reported the first closed and finished genome derived from an uncultured bacterial single cell – a … microbial lineages from a variety of environments. In 2017, the first New Lineages of Life (NeLLi) workshop was held, …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the last two episodes, we’ve covered the specialized software and …
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Cataloging the Microbes that Manage the Health of River Systems
… a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … collected through WHONDRS, a community science river sampling program at Pacific Northwest National Laboratory. … by US National Science Foundation awards DEB1840243, EAR1836768 and DEB1457794. Funding support also was provided from …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… metabolites for multiple applications. The planet’s microbial diversity is immense, yet much of it remains … collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Annotation Group. Many of these bacterial and archaeal genome sequences have been generated using techniques that …
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