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Coordinating Environmental Genomics and Geochemistry Reveals Metabolic Transitions in a Hot Spring Ecosystem
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have … of miniature CRISPR-associated proteins that can target single-stranded DNA. Such proteins have been adapted for … is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron …
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements metagenomics studies. The … large-scale single cell genomics by collecting nearly 500 single cells from a single low diversity hot spring … mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that dominant …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  … % Goal   FY 2026 Total   700.0     8,760     Q1 2026 175 313.081 179% 2,208 2,064 95.4% Q2 2026 175 243.806 139% … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress …
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Elucidating gene expression adaptation of phylogenetically divergent coral holobionts under heat stress
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is … determination. Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and … found across each of the fungal species were protein-coding hotspots. “Ensuring that the most expressed genes are also …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… works.  So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the story behind that giant assembly from Lake …
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Potential virus-mediated nitrogen cycling in oxygen-depleted oceanic waters
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Membrane Bioreactor Pretreatment of High-Salinity O&G Produced Water
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Complete genome sequence of Geobacillus thermoglucosidasius C56-YS93, a novel biomass degrader isolated from obsidian hot spring in Yellowstone National Park
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Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland
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High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India
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