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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm microbial diversity is … Nature highlights the vast array of functional diversity of microbes through a novel approach to better understand … across multiple other research centers around the world. “We’ve more than doubled the number of protein …
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Environmental Genomics Group
Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop computational approaches to …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus sequences.  … Computational Sieves to Filter Sequences There are more microbes on the planet than particles in a handful of dirt, … viruses,” said Simon Roux , a JGI scientist and one of the project co-leads. “But same as DNA viruses, RNA viruses …
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Effects of Polar Light Cycle on Microbial Food Web
Populations of Antarctic lake microbial communities change with the … offers new clues into a unique environment in the natural world. The Impact From the polar regions to the deep ocean, … (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US Department of …
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest … every direction. There are 100 million families around the world whose livelihoods depend on cotton production, and the … for all this new cotton work, and even the original cotton project was to try to bring in molecular methods of breeding …
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An Integrated Dataset to Understand Ecosystem Interaction
… tree and soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. … on the rhizosphere and interactions between the trees, microbes and soil chemistry offers insights into how these … (LANL), and DE-AC05-76RL01830 (PNNL). … BioScales project on JGI Genomes Online Database … BioScales project …
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Jeremy Schmutz
… working for the Stanford Human Genome Center, now the HudsonAlpha Institute for Biotechnology. There he constructed … 5, 16, and 19. Following the completion of the human genome project in 2003, he developed sequencing, assembly, and … 178-183. … Thomson Reuters Highly Cited Researcher/The World’s Most Influential Scientific Minds 2014-2018 (Plant & …
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Rare earth element alcohol dehydrogenases widely occur among globally distributed, numerically abundant and environmentally important microbes
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome … sciences field. Roux will be recognized at the 2025 ASM Microbe Meeting in Los Angeles, Calif.  Roux is also one of … as part of the Early Career Research Program (ECRP). His project, “Characterizing Virus-Driven Alterations of …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Journal publication caps JGI pilot project with fledgling Florida high school … Everglades in Palm Beach County, and particularly about the microbes that play roles in the methane cycle. Their data …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
More than 20 UC Merced students have contributed to the research of 13 JGI scientists since the … shared their thoughts on the students’ efforts. Ben Cole, a project scientist in Visel’s Genomics of Plant-Microbial … Accepted a post-doctoral position with the Plant and Microbe Interaction group at Oak Ridge National Laboratory …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… 5,000 times bigger than most bacteria. To put it into context, it would be like a human encountering another human … keeps its DNA more organized. “The big surprise of the project was to realize that these genome copies that are … like a single cell. The fact that they were a ‘macro’ microbe was fascinating!” “She understood that it was a …
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