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Correlation-based network analysis combined with machine learning techniques highlight the role of the GABA shunt in Brachypodium sylvaticum freezing tolerance
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Natural Prodcast Episode 4: Nancy Keller
… Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Welcome back to Natural Prodcast! … so, so cheap to sequence. Right now, for our particular projects, we’re not doing that right now, but we might. I …   DAN: Sure. I know it’s early on, but you do have a project with the JGI. It’s doing some some fungal genome …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. … able to carry out a broader analysis than had ever been done before to look at how multiple forest fungi have independently evolved to establish symbiotic relationships with plants (mycorrhizae), and particularly how …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as … or even smartphones. This year’s three-day conference featured keynote speeches from Nobel Laureate Jennifer … to know at the beginning of my career, with my postdoctoral project beginning with her strains,” Wessler explained. “She …
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Forming Scientific Connections and Building Community
… and seven graduate students from UC Merced through their long standing internship program. In just two months, the … and also made new friends while working on their summer projects. Watch the short video here to see what they had to … below are the interns, their mentors, and their summer projects. Each intern also mentioned what they loved about …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia … plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. Department of Energy (DOE) … Energy operated under contract no. DE-AC02-05CH11231. This project received funding from the European Research Council …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in … resist. The battle waged below the Earth’s surface is reconstructed by combining a study of microbial communities … The Impact Altiarchaea are abundant and dominant populations in oxygen-poor environments without oxygen deep below …
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Natural Prodcast Episode 23: Aaron Puri
… another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … in terms of their natural products chemistry, and he has a project with the JGI to synthesize the genes for and explore … connected with a wonderful person who’s a Co-PI on a JGI project Amy Schaefer . So we’ve been friends ever since. …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… other forms of  Chloroflexota that adapted to marine environments hundreds of millions of years ago.  The Impact Chloroflexota are bacteria … special skills to break down pollutants and recycle carbon. They were part of an ancient lineage of bacteria to … was done under Contract DE-AC52-07NA2734. Funding for this project was provided by the U.S. National Science Foundation …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent … of thousands of archaeal and bacterial type strains ( GEBA-type strains project ), the delineation of host-virus …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky Way, … Laboratory, have collaborated with global researchers on projects related to understanding how the interactions … such as analytical tools and data repositories to two projects funded through the National Institutes of Health’s …
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Special Initiatives & Programs
… Early Career Research Program .   If “BERSS” is not mentioned in the BER funding call, proposals are NOT eligible for BERSS support through the JGI (with the exceptions of DE-FOA-0003453 and DE-FOA-0003615 , which are both … 10 Tbp sequencing, 500 kbp synthesis, and 200 polar/500 nonpolar metabolomics samples, and should generally conform …
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