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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is …
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A Plant Root Atlas for Tracking Developmental Trajectories
… by then-Biosciences scientist Diane Dickel in 2017. In 2019, plant single-cell methods were officially called out … in wild type and cell identity mutants . Dev Cell. 2022 Feb 28. S1534-5807(22)00033-8.doi: … Five Berkeley Lab Scientists Receive Prestigious Five-Year Research Grant   … The U.S. Department of Energy Joint …
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MycoCosm portal: gearing up for 1000 fungal genomes
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Rex Malmstrom
… approach for isolating individual bacterial cells and amplifying their genetic material, thus bypassing the need to … for stable isotope probing metagenomics. mSystems 8:e01280-22. Volland et al. 2022.   A centimeter-long bacterium with … mycorrhizal fungi. Microbiome 199 Needham, D.M. et al. 2019. A distinct lineage of giant viruses brings a rhodopsin …
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2025 NeLLi Symposium
… discussions centered on how to capture, define, quantify, and functionally characterize microbial diversity. The … Dartmouth University See full agenda at the bottom of this page. … Check back for information on venue and lodging.  … …
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Plant Pan-Genomics Comes of Age
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JGI announces 2024 Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art … applications in support of advancing the bioeconomy.  This year’s project goals range from improving crop productivity … nine researchers accepted for 2024. Proposals are accepted year-round; the next deadline is Jan. 30, 2025. …
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Hiroshi Otani
… pangenomic analysis of the genus Streptomyces. Sci Rep. 2022 Nov 7;12(1):18909. Otani H, Mouncey NJ. RIViT-seq enables … of regulons of transcriptional machineries. Nat Commun. 2022 Jun 17;13(1):3502. Udwary DW, Otani H, Mouncey NJ. New … the natural product galaxy. J Ind Microbiol Biotechnol. 2019 Mar;46(3-4):273-279.   Otani, H., Stogios, P.J, Xu, X., …
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Effects of Polar Light Cycle on Microbial Food Web
… bacteria (phototrophs) in Antarctica’s Ace Lake defy the norm when it comes to nutrient cycling in polar … was separated from the Southern Ocean roughly 5-7,000 years ago and has been well-studied by many researchers for … Water samples from Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A …
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Graduate Students Get Thesis Research Opportunity at the JGI
Twice a year, the DOE Office of Science Graduate Student Research …
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Simon Roux
… the development of novel computational tools to identify virus sequences, the design of new experimental … For this role, Dr. Roux can rely on more than 10 years of expertise in the fields of virus ecology and virus … genomes. Nature biotechnology 39, 578-585. Roux et al., 2019. Cryptic inoviruses revealed as pervasive in bacteria …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… papers during the last decade” by Clarivate Analytics. This year’s list features 6,849 individual researchers from 67 … rank in the top 1% by citations for field and publication year are: Igor Grigoriev (Cross-field) Natalia Ivanova … in its resiliency, as well as a Nature Plants study identifying colonization patterns in eelgrass . Igor Grigoriev’s …
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