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Waiting to Respire
… ancestral bacteria’s energy sources. More than two billion years ago, cyanobacteria acquired the ability to produce … to gain and harness energy. As reported January 28, 2019 in Nature Communications , two research teams joined …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is …
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The Expanding Universe of Methane Metabolisms in Archaea
… gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … metabolisms is “vastly underestimated.” In the March 4, 2019, issue of Nature Microbiology , they mined the … with the first traces possibly at ~3.5 Gy (billion years),” Borrel and Gribaldo said in an email. “Therefore, …
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Tapping the treasure trove of atypical phages
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A Plant Root Atlas for Tracking Developmental Trajectories
… by then-Biosciences scientist Diane Dickel in 2017. In 2019, plant single-cell methods were officially called out … Five Berkeley Lab Scientists Receive Prestigious Five-Year Research Grant   … The U.S. Department of Energy Joint …
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MycoCosm portal: gearing up for 1000 fungal genomes
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2025 NeLLi Symposium
… discussions centered on how to capture, define, quantify, and functionally characterize microbial diversity. The … Dartmouth University See full agenda at the bottom of this page. … Check back for information on venue and lodging.  … …
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JGI announces 2024 Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art … applications in support of advancing the bioeconomy.  This year’s project goals range from improving crop productivity … nine researchers accepted for 2024. Proposals are accepted year-round; the next deadline is Jan. 30, 2025. …
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Rex Malmstrom
… approach for isolating individual bacterial cells and amplifying their genetic material, thus bypassing the need to … mycorrhizal fungi. Microbiome 199 Needham, D.M. et al. 2019. A distinct lineage of giant viruses brings a rhodopsin … BONCAT-FACS.  Nature Comm 10(1) 1-10 Schulz, F. et al. 2018. Hidden diversity of soil giant viruses. Nature Comm . 9 …
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Plant Pan-Genomics Comes of Age
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Effects of Polar Light Cycle on Microbial Food Web
… bacteria (phototrophs) in Antarctica’s Ace Lake defy the norm when it comes to nutrient cycling in polar … was separated from the Southern Ocean roughly 5-7,000 years ago and has been well-studied by many researchers for … Water samples from Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A …
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Hiroshi Otani
… of the genus Streptomyces. Sci Rep. 2022 Nov 7;12(1):18909. Otani H, Mouncey NJ. RIViT-seq enables systematic … the natural product galaxy. J Ind Microbiol Biotechnol. 2019 Mar;46(3-4):273-279.   Otani, H., Stogios, P.J, Xu, X., …
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