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Short sequence motifs, overrepresented in mammalian conserved non-coding sequences
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Webinar: PhycoCosm Tutorial
… JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis … to PhycoCosm (if relevant)? A:  For every genome that we sequence, we provide full analysis (assemble, annotate, work … populated by algal genomes thus defined. We also have some reference plant genomes to help with comparative studies of …
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10 From JGI on the 2019 Highly Cited Researchers List
… and Asaf Salamov were part of a team that presented the first large analysis of an Aspergillus fungal subgroup, … Nature Genetics, the work is part of a long-term project to sequence, annotate and analyze the genomes of more than 300 … Institute for Biotechnology that worked on an updated reference genome for Theobroma cacao, the tree that produces …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… receive a lot of rain.  Previous analysis of the E. grandis reference genome, an international effort by a team that … revealed the largest number of TPS genes of any currently sequenced plant, a number closely followed by E. globulus . … list of putative genes from C. citriodora to known TPS gene sequences from Eucalyptus species and other plants. The …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… proposals, resulting from 95 letters of intent. For the first time, 63 percent of the accepted proposals come from … duckweed through the  CSP New Investigator call . It is the first project to have successfully evolved into a full-scale … to as natural products, the proposal includes plans to sequence several thousand Actinobacteria strains and then …
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JGI Early Career Researchers Featured in mSystems Special Issue
… recent Nature Communications paper, uncovering giant virus sequences in soil for the first time. A second approach known as DNA stable isotope … in the environment. Eloe-Fadrosh and Roux are part of the first cohort to receive Early Career Development awards as …
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Introduction: Sequences and consequences
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Targeted single‐cell sequencing
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JGIota: Sequencing Shiitakes with David Hibbett
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work may … of Tel Aviv University, one of the project co-leads and first author of the study. Members of the Tel Aviv and NCBI …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… time. They also discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public … core gene in nearly half of those same genomes. The team first applied the workflow to a curated reference set of over 300 genomes spanning the fungal …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… of the sex chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in plants can … with: differentiating into male and female sexes. For the first time, the sex chromosomes of shrub willow have been sequenced with sufficient resolution to analyze their …
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