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JGI@25: Using Team Science to Build Communities Around Data
… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … State University led the effort to sequence 1000 fungal genomes to create two reference genomes for all fungi families — essentially, the foundation …
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Trent Northen
Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes … dependent, and is mediated by genomically divergent microorganisms. Nature Microbiology 2019 …
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IMA genome-F18
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… through a process called methanogenesis. Methanogenic microorganisms therefore play a critical role in the global … Until recently, our understanding of these methanogenic microorganisms was narrowed to a type of archaea called  … of oxygen and until recently were thought to be the only microorganisms capable of methanogenesis —  it’s the …
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Maureen Berg
… new high-resolution and high-throughput methods to link uncultivated viruses to their host. With these new methods, …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… the data,” Wilhelm said. Informed by other community-driven standards from the Genomic Standards Consortium, Wilhelm and Simpson assembled a team … hundreds of stable isotope probing genome-resolved metagenomes and will be implementing new tools in KBase to …
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A Horizontal Gene Transfer Event Defines Two Distinct Groups within Burkholderia pseudomallei That Have Dissimilar Geographic Distributions▿ †
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The Power of One, Amplified
… that were missed within paired metagenome assembled genomes (MAGs), and that dominant populations varied with … technologies and bioinformatic tools have helped decode the genomes of tens of thousands of previously unknown and uncultivated microbes through metagenomics. Such techniques …
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Waiting to Respire
Genomes from uncultivated bacteria offers clues to ancestral bacteria’s … teams joined forces and data sets to describe bacterial genomes for related (“sibling”) lineages Margulisbacteria … Carnevali was working with a group of metagenome-assembled genomes (MAGs) dubbed Margulisbacteria, and had found they …
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Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions
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H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups
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Natural Prodcast Episode 2: The Primer, Part 2
… and you can see that different Frankia have different size genomes depending on what kinds of plants, and what kinds of … metabolomics, and natural products in plants, fungi, and microorganisms. If you want to collaborate, let us know!  …
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