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2024 Progress Report
Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area … we provide advanced genomic capabilities, large-scale data, and professional expertise to support the global … the community through responsibly managing our people and resources.     Director's Perspective Over the last year, …
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Natural Prodcast Episode 1: The Primer, Part 1
… they don’t have available in their labs, and we use our resources to help them solve those problems. It’s a … so now here at the JGI, I work with all of the sequencing data that the JGI produces to try to find and identify … and to do research to get a better understanding of that data. ALISON: Awesome. So tell me why should I even care …
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Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v.9.
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… researchers searching for sequences of RNA viruses in large data sets, their work may be akin to finding a single … this workflow, the team combed through more than 5,000 data sets of RNA sequences (metatranscriptomes) generated … Advances in sequencing technologies and computational tools have uncovered a diversity of viruses that infect not …
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Model Choice, Missing Data, and Taxon Sampling Impact Phylogenomic Inference of Deep Basidiomycota Relationships.
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Structure determination of the HgcAB complex using metagenome sequence data: insights into microbial mercury methylation
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Global Archaeal Diversity Revealed Through Massive Data Integration: Uncovering Just Tip of Iceberg
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Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
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Metabolomics
… & Metabolomics Instrumentation … Metabolite Submission Resources & Guidelines … Metabolomics Platform Lead … More Resources …
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MISIP: a data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence and experiment
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Socotra Island the forgotten fragment of Gondwana: Unmasking chameleon lizard history with complete mitochondrial genomic data
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Kjiersten Fagnan
… flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC … hardware and worked closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was … she presented work related to distributed data and workflow management. Dr. Fagnan is also a co-PI for the National …
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