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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, … at the DOE Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National …
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Protein structure determination using metagenome sequence data
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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of … gene clusters (BGCs.) As reported in the recent Database issue of the journal Nucleic Acids Research , … using multiple commonly used sequence analysis tools is a means of expediting BGC and biosynthesis …
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2024 Progress Report
Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area … Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, … Biosurveillance and Biopreparedness. With this plan as our guide, we’ll continue to enable basic science in support of …
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UC Merced Interns Reflect on Their JGI Summer Projects
… worked on ranged far and wide — from implementing new data visualization tools, to using natural language processing techniques to … a fruitful experience for mentors and students alike. Tools like Slack, Google Docs, and GitHub enabled virtual …
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Network Modeling of Complex Data Sets
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The parallelism motifs of genomic data analysis
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Genome‐wide associations with flowering time in switchgrass using exome‐capture sequencing data
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Fast and accurate identification of plasmids and viruses in sequencing data using geNomad
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Natural Prodcast Episode 7: Ben Shen
… first one, first that we call antibody drug conjugates, abbreviated as “ADC”, was approved in the year 2000, and … be useless unless you make the invention available to broad user groups. So, I view the project that we are working on … so everybody, readers of the library, can come to our databases and look for the specific information they are …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… .) This plan aligns the DOE Office of Science user facility with broader national efforts to promote and … a vast range of organisms and ecosystems. These kinds of data could open opportunities along multiple avenues, … expect to offer our user community an exciting range of new tools and capabilities to support their scientific …
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Scaling Up Existing Skill Sets
… and insights on the project and everyone’s willingness to guide or mentor me during my internship.             Name: … I got to work with an enormous set of fungal genomics data. For me, it was an opportunity to adapt my existing … the door for me in the sense that I learned many different tools in bioinformatics research. Also, it consolidated my …
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