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… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies of … structures within cells. This is the largest dataset of its kind ever assembled. The team identified 15 …

… worked on ranged far and wide — from implementing new data visualization tools, to using natural language …

… his team then linked those species-level observations with data on microalgal communities across different ocean … from pole to pole, using metatranscriptome and metagenome data from the JGI. With multiple threads of evidence showing … The JGI Algal Program makes genomes and multi-omics data from JGI CSP projects publicly available at the …

… By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the … Virophage data on IMG/M data portal …

… Database provides details on river microbes in 90% of US … Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering … The 3.8 trillion bases or Terabases of sequencing data, along with geochemical and geospatial measurements …

… Rauer Islands. Additionally, they compared metagenome data generated from samples collected at four Rauer lakes to … level genomic variation. The genome and metagenome data are available through JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) platform. These data allowed researchers to define a haloarchaea …

… the microbes that play roles in the methane cycle. Their data report, which provides the only known reference microbiome data sets for the Loxahatchee Refuge,  was published in the … metagenome assembly, and even an introduction to data analysis using the  IMG/M system . A Comprehensive …

… or DRI for short.  A kaleidoscope of structure-function data To study DRI experimentally, Blaby-Haas, Grosjean and … Scientists at Stanford’s SSRL were able to provide crucial data supporting the presence of the zinc-mirror heme site — … loses this protein, energy metabolism is disrupted. These data create a multilayered understanding of this Domain …

… , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  JGI Genome … being monitored and the team plans to continue collecting data to understand the ERD process.  … View the Dataset on IMG/M data portal … Datasets …

… sequenced without pooling, which yields ~ 180 Gb of data per library. Q: How much DNA/coverage is required for … Methylation detection currently only works using subread data, PacBio is working on support to use CCS data as input. Data analysis Q:  What types of analysis …

… a vast range of organisms and ecosystems. These kinds of data could open opportunities along multiple avenues, … community with advanced genomic capabilities, large scale data, and professional expertise while responsibly managing … toward exciting new directions in science, technology and data science for the JGI,” noted JGI Deputy for Science Axel …

… The DNA Synthesis Program aims to generate large datasets to explore sequence-function relationships, … has a research & development group, a team that develops data science tools, and a user science group. … The MycoCosm web portal provides data access, visualization, and analysis tools for …