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FICUS Overview
… The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in … and multidisciplinary nature of DOE mission science projects, this initiative aims to encourage innovative … and selection processes, making it difficult to propose projects that truly integrated the capabilities of more than …
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Micro-Scale Applications Group
… The Micro-Scale Applications group explores the genetic makeup of natural microbial … technology in order to enhance the quality of single-cell genomes and directly link functional information with individual cells. Research Team    … internal analytical standards to accurately measure environmental microbiome activity levels.This functional assay …
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Finding the Fermenters
… prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in environments with … browser that allows other researchers to study the genomes and predict the metabolic abilities of these … than 400 cultured rumen prokaryotes from the  Hungate1000 project . They also used the tool to predict possible …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The … Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … anything. The collaborative consortium behind the GROWdb project demonstrates not only how researchers can …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader … lineages. To learn why, researchers analyzed 135 fungal genomes representing major fungal families, including those …
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Improving the Cacao Genome and Phytozome
… brands can’t exist without cocoa According to the  International Cocoa Organization (ICCO), global cocoa bean production … a draft first genome of  Theobroma cacao  – the tree that produces cacao beans – was released by a Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the plant team …
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Frigoriflavimonas asaccharolytica gen. nov., sp. nov., a novel psychrophilic esterase and protease producing bacterium isolated from Antarctica
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have … crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model … have also harnessed the switchgrass gardens for other projects. At the 2021 JGI Annual Meeting, David Lowry talked …
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Special Initiatives & Programs
… Early Career Research Program .   If “BERSS” is not mentioned in the BER funding call, proposals are NOT eligible for BERSS support through the JGI (with the exceptions of DE-FOA-0003453 and DE-FOA-0003615 , which are both … 10 Tbp sequencing, 500 kbp synthesis, and 200 polar/500 nonpolar metabolomics samples, and should generally conform …
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Statement on the Use of Genomics Data
… the benefit to society. Inspired by the Human Genome Project (HGP), and building upon the principles for open access in the field of genomics … Sequence Database Collaboration (INSDC) has managed the growing corpus of sequence data for all organisms as a … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Hyperdiverse, bioactive, and interaction-specific metabolites produced only in co-culture suggest diverse competitors may fuel secondary metabolism of xylarialean fungi.
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact … and  IOS-1456958 . Sequencing of  Dothideomycetes genomes were conducted as part of the 1000 Fungal Genomes …
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