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The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial communities, with results published in the  November 2022 issue of Microbiome … probing (SIP) proved to vastly reduce labor and improve results. Applying this method to the study of a particular …

A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis … In the following guest piece, JGI user Dr. Tan details the results of the team’s work. Morels are economically, … these analyses, we conducted further field experiments to determine the biochemical processes taking place during the …

JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single … replicate faster and produce more progeny. This can provide short- and long-term impact on host metabolism in general, or on host …

… automations for DNA design, assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables … CRISPR gRNA design tool  … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, … … BOOST … Synthesis Platform Lead … More Resources … Software Engineers in the Synthetic Biology Informatics Group …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, (meta)transcriptomic, and functional … Microbial Genomes group is focused on:  Developing state-of-the-art data processing and analysis pipelines for the …

Our lab is using mass spectrometry based metabolite profiling to provide direct biochemical datasets to improve our understanding of microbial metabolism. Of particular interest is understanding the distributed and …

… well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly simple: place these algae in a container … As any good cook knows, recipes can be refined for best results, often by starting with identifying the right …

In this short video, UC Merced undergraduate and graduate students … And also specifically, it sparked my interest in bioformatics, so that’s what I’m gonna take with me to the … are a little bit stronger in computing, so I was kind of worried coming into the, the internship that maybe I …

Populations of Antarctic lake microbial communities change with the … with light availability. A long-running time-series study offers a first glimpse into a full season’s cycle of this … from all three sections of the stratified water and determined that the microbial communities look very different …

… which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … did so by analyzing this huge sample set specifically using results from tissue and condition-specific expression … in the nitrate-subjected plants but not the ammonium. These results highlight differences in plants’ response to nitrate …