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When “The Blob” Made It Hotter Under the Water
… climate change impact on marine microbial communities. The Science A team of researchers tracked the impact of a … go from coastal to open ocean waters. Between 2010 and 2016, Hallam and his colleagues collected more than 270 water … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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How Filamentous Fungi Sense Food
… networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … the use of deletion strains generated by Grant P01 GM-068087 “Functional Analysis of a Model Filamentous Fungus” …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… decade” by Clarivate Analytics. This year’s list features 6,849 individual researchers from 67 countries. Those from the JGI whose publications rank in … . Published in the October issue of Nature, the study highlights the vast functional diversity of microbes by …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… may be akin to finding a single snowflake on a colored-in page of that book. Published online September 28, 2022, in … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … learned from JGI’s Nikos Kyrpides that his Microbiome Data Science group was also working on RNA virus mining. After a …
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Toward More Efficient Artificial Photosynthesis
… and utilize carbon in a synthetic fixation cycle. The Science Chloroplasts are the factories in plant cells. Using … composition variants. Summary In the  May 8, 2020 issue of  Science , a team led by Tobias Erb, director of the MPI for … (MaxSynBio), the European Research Council grant (ERC 637675 ‘SYBORG’), as well as the US Department of Energy …
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Enlarging Windows into Understanding Gene Functions
… encoded in the genome sequence is part of the integrative science mission of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … as well as discover new functions. To help drive JGI User science we have implemented these two new methods as a …
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Gene Expression: From On-Off Switch to Dial
… gene expression helps identify variants in yeast genes. The Science Scientists have developed a more nuanced library … published in the  Proceedings of the National Academy of Sciences (PNAS), offers more ways for scientists to explore … Foundation, and the JGI Synthesis Program under FP00005685. In addition, M.D. acknowledges funding from a National …
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A Complex Confection Decoded: Sugarcane Reference Genome
… can work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by … . The work led by researchers at Australia’s national science agency CSIRO, the French Agricultural Research … Phytozome .   … The work (proposal: https://doi.org/10.46936/10.25585/60001084 and …
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Fungus Fuels Tree Growth
… growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella elongata enjoys a dual … The cuttings included genotypes from the DOE BioEnergy Science Center (BESC), predecessor of  DOE’s Center for … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  Community Science …
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Computationally Classifying Fungal Lifestyles
… on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Vector Machine (SVM)-based prediction of lifestyle based on 6 gene clusters showed a >95 % accuracy in correctly …
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Streamlining Regulon Identification in Bacteria
… transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on … coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions is part … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Better Genome Editing for Bioenergy
… to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput … of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility. Y. lipolytica is a tantalizing … was supported by DOE Joint Genome Institute grant  CSP-503076 (IW, HA, and MB) and NSF  1706545 (IW). HA and JW were …
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