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DAP-seq Drives Robust Mapping of Gene Regulation
… bioenergy and bioengineering applications. “We worked with 10 species ranging from grasses to broccoli and trees like … binding maps for 360 transcription factors across 10 plant species, illuminating thousands of regulatory …
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Filling in the Plant Tree of Life
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JGI announces final round of 2022 Functional Genomics awardees
… genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that …
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How Filamentous Fungi Sense Food
… tree of life, enriching the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was … a Joint Genome Institute Community Science Program grant (CSP 982), and funds from the Fred E. Dickinson Chair of Wood …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… samples from wells at the site in 2007, 2009, and 2010. DNA was extracted from the samples that were sequenced … ago. The NRAP site is still being monitored and the team plans to continue collecting data to understand the ERD … The work (proposal:  10.46936/10.25585/60000717 ) conducted by the U.S. …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… be used to hypothesize environmental conditions.  The team plans to monitor and regularly update the Metagenome …
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The Big Deal About Short Plants
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… The work (proposal: award at  https://doi.org/10.46936/10.25585/60001405 ) conducted by the US Department of Energy … 2020 research and innovation program (grant agreement no. 101001675-ORIGINS) and from the FRM/FSER …
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The More the Merrier: Making the Case for Plant Pan-genomes
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Better Genome Editing for Bioenergy
… This work was supported by DOE Joint Genome Institute grant  CSP-503076 (IW, HA, and MB) and NSF  1706545 (IW). HA and JW … Foundation Graduate Research Fellowship Program ( DGE-1110007 ). SA, AB, and MB were supported by NSF  1706134 . SL …
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JGI@25: The Little Alga That Could
… specific algae. The reference genome is cited in roughly 10% of all since-released publications on green algae. “The …
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Expanding Virophage Diversity
… the number of known high quality virophage genome sequences 10-fold through computational approaches. By mining more … genome size range from 13.8-29.3 kilobases (Kb) to 10.9-42.3 Kb. Additionally, the gene counts have similarly …
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