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… gene models in support of JGI’s contributions to the Human Genome Project, he began developing larger comparative … et al., 2023.The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type plus and minus strains … genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors. Nature …

Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … the 1000 Fungal Genomes Project, which aims to provide a reference genome for each of the fungal families. … had access to over 100  Dothideomycetes genomes, just enough of a sample size to test if a computer algorithm …

… to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … and metatranscriptome sequences, as well as individual reference fungal genome sequences assembled as part of its … near the roots. But the deeper down and away from the roots one goes, the more bacteria show up. The data underscore …

… collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … have been generated using techniques that the JGI has pioneered, including single-cell genomics and metagenomics. … collapsed, while these issues are not commonly seen with reference isolates. “For secondary metabolite discovery in …

… guide RNA to lead it to the correct sequence to snip — but not all guides are effective. To ensure the gene editing … in  Metabolic Engineering , a team of researchers likewise honed their tool before felling their research problem: at a … included researchers at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User …

… analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to enable … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and …