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… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then …

… mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that dominant … of bioinformatics tools for  extracting snippets of microbial genomes directly from environmental sequence data, by piecing each genome together from large …

… analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI and …

Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of … and eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics (metagenomics, … user community and supports various user projects in the Microbial Program. In an LDRD-funded project, Dr. Schulz …

Dr. Grigoriev joined the DOE Joint Genome Institute in 2003, following his postdoctoral … National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of California, Berkeley. He … and lignocellulose degradation encoded in the genome sequence of  Schizophyllum commune . Nat Biotech.  2010; 28: …

… change. Researchers at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … Laboratory, and the HudsonAlpha Institute for Biotechnology sequenced sphagnum  genomes from plants selected by a team from Duke University, …

… was the last major crop without a reference quality genome and now crop researchers can work toward advancing … accounts for 80% of global sugar production. A reference genome for the sugarcane cultivar R570 has been  published … Community Science Program; in 2018, a monoploid reference sequence of sugarcane was published as a step forward in …