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Supporting FAIR Scientific Workflows with the JGI Analysis Workflow Service (JAWS)
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Natural Prodcast Episode 7: Ben Shen
… think his energy is infectious. DAN: I’ll say up front that JGI recently started collaborating with Ben and his group to … to the Primer episodes, then you heard me talk about JGI’s Earth Secondary Metabolome initiative, and our … different people have different numbers, but in general, an authoritative number for total number of natural products of …
Learn more
Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … new features like a public API and ecosystem landing page, as well as the growth of different entities,  further …
Learn more
A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of … over 5 years, provides users with the genome browsers, gene pages, search, BLAST and BioMart data warehouse interfaces … August 6th? All URLs with a domain of  https://phytozome.jgi.doe.gov will be forwarded ( where possible ) to their …
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Gut Fungi: Unexpected Source of Novel Chemicals
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … In the lab, O’Malley and her team — notably, first author Candice Swift — verified that the fungi expressed … National Laboratory. The team’s research at both the JGI and EMSL was enabled by the Facilities Integrating …
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Natural Prodcast Episode 8: Eric Schmidt
… can use peptides for! That’s what his collaboration with JGI is all about, and we talk about it a bit here. I have … And that’s related to what my project is with the JGI. Where, it’s again, with ribosomal peptides, we’re … DAN:  Yeah. Do you want to talk a little more about your JGI project?  ERIC:  Sure. So with that project, we’re …
Learn more
Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  … The webinar featured  Trent Northen and Ben Bowen of the  JGI Metabolomics Program , along with Jenny Mortimer, … see this  Metabolomics Data Analysis – Tips from Users page.  Q:  Is the metabolic study able to build a profile …
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An Integrated Dataset to Understand Ecosystem Interaction
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … The work builds off a longstanding partnership between the JGI and Oak Ridge National Laboratory, dating back to the … BioScales project on JGI Genomes Online Database …
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2025 NeLLi Symposium
… in the next tab over. Tab labels are at the top of the page.  Harriet Alexander, Woods Hole Oceanographic … JGI Organizers …
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FICUS Overview
… free to the PI by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides customized analysis, the JGI also participates …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… may be akin to finding a single snowflake on a colored-in page of that book. Published online September 28, 2022, in … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … a senior investigator at the NCBI and one of the senior authors on the paper, of the uncovered viral diversity. …
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Busting the Unbreakable Lignin
… lignin can, in fact, be deconstructed without oxygen. Lead author Tom Lankiewicz cultivated anaerobic fungi … Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential genes responsible for lignin deconstruction. (The JGI also conducted RNA sequencing and alignment to the …
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