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The Big Deal About Short Plants
… “short plants” such as mosses could be uniquely powerful in helping scientists link plant genetic sequences to what they do. But sequencing the genome of one short …
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IMG/VR
JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to … to browse and search through the more than 2 million viral sequences available in IMG/VR v3. …
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A Mentor’s Perspective on Training the Next Generation
Over the years, hundreds of interns have come to the JGI from all parts of the globe to gain lab … they’ve all mentioned how invaluable their time at the JGI was and how great it was to have an experienced career …
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Kanwar Singh
Kanwar spends part of his time assisting JGI users by processing their single cell samples using our …
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Danielle Goudeau
Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow cytometric analysis, cell sorting, genome …
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SIPs with Standards
Stable Isotope Probing (SIP) is a powerful technique for studying … catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible … multiple teams and analyses. This episode, Rex Malmstrom (JGI), and Roli Wilhelm (Purdue University), share a few …
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Exploring Polymorphisms Created by Transposable Elements
My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed to in the grass model species Brachypodium hybridum . …
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Back in the Lab: the 2023 Summer Intern Experience
… in several years for students and researchers alike at the JGI. With the past few years upended by the pandemic, 2023 gave interns the opportunity to be fully immersed in not only their work, but the opportunity to collaborate with and learn from fellow researchers onsite …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
Phytozome workshop held during the June 2022 CROPS Conference … at the HudsonAlpha Institute for Biotechnology. Phytozome is the Plant Comparative Genomics portal of the Department of Energy …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …
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MGM Workshop at Fisabio Summer School
Genomics & Metagenomics Workshop The workshop is addressed to students and professionals of biology, biomedical research, the health sciences and related fields who are interested in learning … and the human microbiome. The workshop will train participants in state-of-the-art analytical methods in this area, by …
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MGM Workshop at Fisabio Summer School 2025
Register here The workshop is addressed to students and professionals of biology, biomedical research, the health sciences and related fields who are interested in learning … and the human microbiome. The workshop will train participants in state-of-the-art analytical methods in this area, by …
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