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Nick Everson
… departments. He previously served as JGI’s Business Manager from 2007 to 2012, overseeing all financial and logistics … Berkeley Lab, he served in the US Navy for 6 years as a submarine electrician and a financial analyst in industry and … 2015 Served on the Council of UC Staff Assemblies (CUCSA) from 2015 to 2018, representing Berkeley Lab in this UC-wide …
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JGI@25: Studying Sorghum’s Survival Skills
… but other important crops as well. In 2009, the JGI sequenced and analyzed the first reference genome for … genome. Sorghum was the second cereal crop with a fully sequenced genome (following rice in 2002) and the first C4 … and Extension Center. 2017: The JGI and collaborators sequence and annotate the Sorghum bicolor reference genome, …
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Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279T), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia
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User Support
… specific milestones, either by automated emails or emails from your Project Manager. Your Project Manager will also …
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User Advisory Committees
… external advisory body, the JAC includes representatives from all specialized JGI advisory and executive committees. …
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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel … published in the  November 2022 issue of Microbiome . High-throughput stable isotope probing (SIP) proved to … effects of climate change. The team’s study used samples from the area immediately surrounding AMF’s long filaments, …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… collaborators at the Center for Scientific Research and Higher Education at Ensenada (CICESE) in her first microbial … found informatics to be intimidating. That first exposure from great interactions with Dr. Ben Cole and Dr. Axel Visel …
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Axel Visel
… at the JGI. Dr. Visel received his Ph.D. in 2004 from the Max Planck Institute in Hanover, Germany, where he … developed and applied novel computational and experimental sequence-based methods for elucidating the gene regulatory … Merced. Dr. Visel also served as JGI Interim Director from March 2016 – March 2017.   …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … class  Dothideomycetes includes fungi that obtain nutrients from decaying organic matter (saprobes), and many plant … genome data from newly sequenced genomes, they also built a high-quality phylogenetic tree for  Dothideomycetes . The …
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A Collaboration to Improve Plant Genome Annotations Across Species
… – the complete set of RNA molecules transcribed from all the genes within a cell or tissue at a specific … Schmutz is the Plant Program Lead at the JGI. Sarah:  Why is a resource like this important to the field of plant … plants but not the ammonium. These results highlight differences in plants’ response to nitrate …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… guest piece, postdoctoral researcher Joseph Napier from the Juenger lab and computational biologist Paul … , which can have pronounced ecological and evolutionary consequences. A previous study conducted by our research team … use this unique opportunity to quantify how transitions to higher ploidy could be generating these observed patterns. …
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