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Draft genome sequences of Butyrivibrio hungatei DSM 14810 (JK 615T) and Butyrivibrio fibrisolvens DSM 3071 (D1T).
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Whole genome sequence, CAZyme repertoire and sugar metabolic model of the phytopathogenic fungus Kretzschmaria zonata GFP 132
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Amplicon sequencing of ice and water phytoplankton and bacterial communities during an extreme winter in a central Canadian great lake
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How Filamentous Fungi Sense Food
… break down the components of plant cell walls, which range from simple to complex carbohydrates, and then convert them … genes. This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  recently published … as they responded to available carbon sources, which ranged from simple sugars to plant biomass. One of these techniques …
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Brachypodium: 20 years as a grass biology model system; the way forward?
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… domesticate some 60 strains, inserting into them a genetic sequence that acts as a “landing pad.” Mouncey adds, “Once … relatives with the BGCs, JGI scientists could relieve BGCs from their former genetic repression, enabling scientists to … different gene deletions in four gammaproteobacterial species, and then removing the editing machinery afterward …
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A Plantiful Future: Xiaohan Yang
… technology to conscientiously mix traits of different plant species will help us get there. …
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Charting Progress toward Professional Goals
… Select interns look back on meaningful lessons from their summer experiences at the JGI Berkeley Lab offers … in the SEED Scholars @ LBNL program,  with support from  the SEED program at UC Berkeley. Sally Liao came in … people in my group and my mentor looked over and was like, “why are you explaining phylogeny to people who have been …
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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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Yasuo Yoshikuni
… Discovering untapped biochemistry in microorganisms from hidden corners. Nature Review Microbiology , 2022 …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… scientists have shown at least two microorganisms from different phyla are capable of methanogenesis. Using … in  Nature .  Researchers started by collecting samples from Yellowstone’s hot springs, an extreme environment with … sources of methanogenesis, with metagenomic support from the JGI. First they were able to identify the potential …
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A One-Stop Shop for Analyzing Algal Genomes
… and what they do. Summary The name PhycoCosm stems from the Greek phykos, meaning seaweed. Seaweeds are algae, … algal genomes can be incredibly complex and difficult to sequence and understand. A team of researchers led by Algal … inquiry: it shows a full phylogenetic tree of more than 100 sequenced algal genomes — many sequenced by the JGI — so …
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