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Ray Turner Completes Last Tour of Lab Duty at JGI
… a close as this previously retired Naval Commander retires from Berkeley Lab. For the last 15 years, Ray Turner has … a close as this previously retired Naval Commander retires from Berkeley Lab. On June 24, in what was billed as a … a mask for Ray to wear and a red carnation lei flown in from Maui, care of the Admin Group’s Terri Bartolome. What …
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A Collaboration to Improve Plant Genome Annotations Across Species
… – the complete set of RNA molecules transcribed from all the genes within a cell or tissue at a specific … Schmutz is the Plant Program Lead at the JGI. Sarah:  Why is a resource like this important to the field of plant … resource. To demonstrate that, we included datasets from two species, one of which is sweet sorghum Rio from a …
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Subsurface hydrocarbon degradation strategies in low- and high-sulfate coal seam communities identified with activity-based metagenomics
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… all the work that went into this program was the feedback from the graduate student interns; “it changed what I want … interns. For him, it was a special moment to see interns go from being “intimidated and nervous” at the beginning of the … was Travis Lawrence , the first graduate student intern from the 2014 cohort. After working on his post-doctoral …
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JGI@25: Solving the Mystery of the Missing Oil
… the dispersed oil.   Terry Hazen on Oceanospirillales microbes   Terry Hazen Perspective on the Deepwater Horizon …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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Leo Baumgart
… and Viola Willemsen. "Two deeply conserved non-coding sequences control PLETHORA1/2 expression and coordinate …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… all fungi, and found that some of these genes have moved from the mitochondria into the nuclear genome over … time. They also discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public … learning models that predict biological traits from DNA sequences. The study also confirmed that mitochondrial and …
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The JGI Data Portal: Improving User Experience
… JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal … are more broadly applicable to the download processes from the other JGI Portals, as well. “For thousands of … experience and beginning work on the download experience from MycoCosm and PhycoCosm, with the intent of eventually …
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JGI Workshop at SIMB NP Meeting
… expressing a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE …
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