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The genomic footprints of wild Saccharum species trace domestication, diversification, and modern breeding of sugarcane
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Fungal Friends or Foes in Plant Roots
… roots are akin to the ground floor lobby. People walking into the lobby have many reasons for being there, but … studies of plant root microbiome and other microbiomes by providing reference genomes of the key community participants and enabling future metagenomics studies.   …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… hybrid event, with guests joining onsite at the Integrative Genomics Building at Lawrence Berkeley National Laboratory … the Weizmann Institute of Science’s Assaf Vardi, who delved into algae blooms and the alga-viral interactions within … component of a genome sequence, accounting for 45% of the human genome and 50-80% of certain plant genomes including …
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JGI on the 2020 Highly Cited Researchers List
… a consortium that  released a very high quality reference genome sequence of green millet ( Setaria viridis ) in  … to the release of 52,515 publicly-available microbial draft genomes generated from environmental samples around the … of a team that  released a reference genome sequence and genomic toolkit for the perennial grass  Miscanthus sinensis …
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How Filamentous Fungi Sense Food
… from simple to complex carbohydrates, and then convert them into simple sugars. More importantly, when faced with a … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … enriching the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was also provided …
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The Case for Conservation
… moss Ceratodon purpureus is a short plant with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each … applications. These applications include crop improvement insights that could benefit candidate biofuel crops. Summary …
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JGI@25
… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We … to advancing the frontiers of environmental and energy genomics. The two-story mural at the Integrative Genomics Building was painted by Berkeley-based artist Nigel …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… in the journal Science. It detailed how they’d used metagenomics — a then-novel approach which allows scientists to … vital to facilitate the assembly of small DNA fragments into larger and coherent pieces called contigs — into genes … and … that was really the foundation for many of the tools that are available these days and that are widely used …
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Forming Scientific Connections and Building Community
… This year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … biosynthetic gene cluster annotation by leveraging a large genomic model ” Leonel Gonzalez : “It’s been great having … ” Anna Kucherova : “I got to learn about skills and tools that I’d never done before from my mentors. Also, …
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UC Merced Interns Reflect on Their JGI Summer Projects
… skills as well as build their network in the field of genomics and scientific research. The topics students worked … far and wide — from implementing new data visualization tools, to using natural language processing techniques to … the goal of inspiring students to embark on a career in genomics, and to help foster a diverse future workforce in …
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Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution
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Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes
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