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Mapping Heat Resistance in Yeasts
… yeast Saccharomyces cerevisiae , allowing this species to grow better than its closest relative S. … then used a series of random insertions of a foreign DNA sequence to generate a huge pool of mutants, each containing … died and others grew well; the survivors had their DNA sequenced at the JGI as part of a 2014 Community Science …
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Accelerating Metagenomics Discoveries with Deep Learning
… of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural similarities in proteins that low sequence identity may belie. The technology he’s using is … Deep learning algorithms can vectorize faces… … so, why not proteins?         …
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Metagenomic reconstruction of nitrogen and carbon cycling pathways in forest soil: Influence of different hardwood tree species
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Soil virus offers insight into maintaining microorganisms
… AMGs in soil viruses thought to break down chitin, the gene sequences were cloned by the JGI.  The JGI’s DNA synthesis … and annotation of all publicly available genomes in three domains of life.  Using the IMG suite, JGI retrieved … and AMGs. It could spawn future research into understanding why these AMGs exist in the first place, and what function …
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Synthetic hybrids of six yeast species
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Phylogenetic and Phylogenomic Definition of Rhizopus Species
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, …
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Understanding Wildfire Recovery, Starting in Soil
… which microbes in the soil persist after a wildfire — and why they thrive — gives forest managers more avenues to … harbored fungal genomes, including a novel Leotiomycetes species and Coniochaeata lignaria , and both DNA and RNA … builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful snapshot of what soils …
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Taking Stock of the Known and Unknown Microbial Space
… genomic biodiversity. Using publicly available genome sequence data generated over the past three decades, their study assesses what fraction of the … “It’s a reminder of the urgency to cultivate new microbial species.” Targeted Explorations for Understanding the …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to Africa to … of France’s Institut de Biologie. His team proposed to sequence  Chaetoceros microalgae, or diatoms. Through the … provide more information on these ecologically relevant species. Another focus area was inter-organismal …
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Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds
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Fungus Fuels Tree Growth
… in order to get  M. elongata and  I. europaea  genomes sequenced and annotated for this study. The team found that, …
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