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Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds
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A Community Resource for Secondary Metabolite Researchers
… of "primary metabolites"—chemical compounds shared by most living creatures for energy, growth and reproduction—most … time of publication, it is the largest repository of BGC sequence data from over 1.3 million publicly available … agriculture. This comprehensive public repository of BGC sequences that come pre-annotated using multiple commonly …
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The More the Merrier: Making the Case for Plant Pan-genomes
… in the laboratory. “We are fortunate because the progenitor species of  Brachypodium hybridum are still extant (whereas … genomically the whole complex of progenitors and descendant species and, consequently, the evolution of polyploidy.” … A pan-genome is the nonredundant set of genes found in a species, but in this case, the team included two species in …
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Micro-Scale Applications Group
… access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover the genomes of uncultivated … now uses laser microdissection to selectively isolate and sequence microbial aggregates after first imaging with …
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Evolution of a Fungal Gene Expression Regulator
… in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to changes in protein structures and … the fungal tree of life to date, involving more than 500 species of fungi. The Impact Interactions between plants and … life, they tracked the evolution of 5mC pathways across 528 species. The researchers found that unlike most flowering …
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Methane Makers in Yosemite’s Lakes
… (a marmot!) as they’ve sampled the microbial communities living in the mountaintop lakes of the Sierra Nevada …
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The fungus that made itself at home
… from similar organisms, researchers have gained insights on why the dry rot ( Serpula lacrymans ) is so destructive in … from North America – against a third fungal Serpula species, S. himantioides from Europe, that was sequenced and analyzed by the JGI. The researchers found …
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Phylogenomics and genetic analysis of solvent-producing Clostridium species
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… A:  Contacts are listed on the proposal call page. Feel free to  reach out to any of them with questions. Q:  Apart … but they provide scientists with accepted proposals free access to their resources. …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of letters … of all the other letters of the alphabet. Yet the specific sequence of these four letters represents an organism’s … the binding location for most transcription factors in a species,” O’Malley said. “It’s a unique capability; no one …
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Genome sequence of Phaeobacter inhibens type strain (T5T), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… organisms can do. And we need the field’s context to see why it matters.” As his career progressed, Hungate has … flow — quantitative rates of element flow — to individual species?” As Hungate shared his approach to those questions … these amazing technologies that the JGI has to identify and sequence who’s making what, that the context at a microscale …
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