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Webinar: MycoCosm Tutorial
… JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … 1.  Q(uestion): Do you accept oomycetes to be proposed for genome sequencing, or only “true fungi”? A(nswer): Our … address some of the most pressing challenges of our time. For more information, please visit  …
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Learning to Look
… answer the question, “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters … and a unique chronic infection cycle. “We’re not sure why we systematically manage to miss them; maybe it’s due to … first worked on a reference dataset that included genome sequences known to be affiliated with the Inoviridae. “What …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. … ( Actinomycetota ), a group of bacteria with diverse metabolic activities. Found in marine and terrestrial … Group. Many of these bacterial and archaeal genome sequences have been generated using techniques that the JGI …
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Picking Up Threads of Cotton Genomics
… Berkeley National Laboratory (Berkeley Lab) has now sequenced and assembled the genomes of these five cotton … , both faculty investigators at the HudsonAlpha Institute for Biotechnology. “The goal has been for all this new … insights on crop improvements at a genetic level, including why having multiple copies of their genomes (polyploidy) is …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have new insights … and cyanobacteria create the air we breathe and the fuel for food webs as they turn carbon dioxide and water into … of that machine — photosynthesizers’ DNA and RNA. These sequences provide a list of machine parts, and an idea of …
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Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg and … National Laboratory (Berkeley Lab), generated genome sequences for nearly 600 green millet plants and released a …
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The Case for Conservation
… with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each representing a … advances in sequencing technologies applied to the effort. The Impact Found on all continents, including … comes from finally having an answer to the question, “Why bother keeping this?” For Stuart McDaniel’s lab at the …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… within their rumen. There is another climate-minded reason for studying rumen: Livestock live off plant matter, and … to provide a cataloged and curated culture and genome sequence resource of rumen microorganisms . Thanks to the … rumen microbes are awesome and this is just another example why.” …
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JGI Scientists Pen Genome Watch Articles
… Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — and … Institute in the UK — a nonprofit that was founded to help sequence the human genome. Today, the Sanger Institute … hot topics in genomics.” And it makes sense to Woyke why JGI would have this role. “We work with leaders in …
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Uncovering Novel Genomes from Earth’s Microbiomes
… leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. … under laboratory conditions, their genomes can’t be sequenced using traditional approaches. Identifying and … designed for biologists and bioinformaticians, developed metabolic models for thousands of MAGs. The models are now …
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JGIota: Looking Back at Sequencing for Soybeans
… The soybean is a crop that could boost biofuels and fertilize fields. So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome sequence, …
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